Table deuterostome mitochondrial genomes analysed in this study. Organism classification is also reported




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Table S1. Deuterostome mitochondrial genomes analysed in this study. Organism classification is also reported.


Classification

Species

AC number

Vertebrata, Mammalia

Homo sapiens

AF347015

Vertebrata, Mammalia

Oryctolagus cuniculus

AJ001588

Vertebrata, Aves

Gallus gallus

X52392

Vertebrata, Archosauria

Alligator mississippiensis

Y13113

Vertebrata, Testudines

Chrysemys picta

AF069423

Vertebrata, Squamata

Dinodon semicarinatus

AB008539

Vertebrata, Amphibia

Rana nigromaculata

AB043889

Vertebrata, Elasmobranchia

Squalus acanthia

Y18134

Vertebrata, Neopterygii

Gadus morhua

X99772

Vertebrata, Neopterygii

Latimeria chalumnae

U82228

Agnatha, Hyperoartia

Petromyzon marinus

U11880

Agnatha, Hyperoartia

Lampetra fluviatilis

Y18683

Agnatha, Hyperotreti

Myxine glutinosa

AJ404477

Agnatha, Hyperotreti

Eptatretus burgeri

AJ278504

Cephalochordata

Branchiostoma floridae a

Y16474

Cephalochordata

Branchiostoma lanceolatum

AB194383

Cephalochordata

Branchiostoma floridae

AF098298

Cephalochordata

Epigonichthys lucayanus

AB110092

Cephalochordata

Epigonichthys maldivensis


AB110093

Cephalochordata

Branchiostoma belcheri b


AB078191

Cephalochordata

Branchiostoma belcheri (Genkai-2)

AB083383

Cephalochordata

Branchiostoma belcheri (Akashi-1)

AB083384

Cephalochordata

Branchiostoma belcheri (Akashi-1)

AB083385

Cephalochordata

Branchiostoma belcheri (strain O4.6) c

AY932825

Cephalochordata

Branchiostoma japonicum

DQ407722

Tunicata, Ascidiacea, Stolidobranchiata

Halocynthia roretzi

AB024528

Tunicata, Ascidiacea, Phlebobranchiata

Ciona savignyi

AB079784

Tunicata, Ascidiacea, Phlebobranchiata

Ciona intestinalis sp A

AJ517314

Tunicata, Ascidiacea, Phlebobranchiata

Ciona intestinalis sp B

AM292218

Tunicata, Ascidiacea, Phlebobranchiata

Phallusia fumigata

This study

Tunicata, Ascidiacea, Phlebobranchiata

Phallusia mammillata

This study

Tunicata, Thaliacea

Doliolum nationalis

AB176541

Hemichordata, Enteropneusta

Balanoglossus carnosus

AF051097

Hemichordata, Enteropneusta

Saccoglossus kowalevskii

AY336131

Echinodermata, Asteroidea

Asterina pectinifera

D16387

Echinodermata, Asteroidea

Pisaster ochraceus

X55514

Echinodermata, Asteroidea

Luidia quinalia

AB183558

Echinodermata, Asteroidea

Asterias amurensis

AB183559

Echinodermata, Asteroidea

Astropecten polyacanthus

AB183560

Echinodermata, Asteroidea

Acanthaster planci

AB231475

Echinodermata, Asteroidea

Acanthaster brevispinus

AB231476

Echinodermata, Crinoidea

Florometra serratissima

AF049132

Echinodermata, Crinoidea

Gymnocrinus richeri

DQ068951

Echinodermata, Crinoidea

Phanogenia gracilis

DQ068952

Echinodermata, Echinoidea

Paracentrotus lividus

J04815

Echinodermata, Echinoidea

Arbacia lixula

X80396

Echinodermata, Echinoidea

Strongylocentrotus purpuratus

X12631

Echinodermata, Holoturoidea

Cucumaria miniata

AY182376

Echinodermata, Ophiuroidea

Ophiopholis aculeata

AF314589

Echinodermata, Ophiuroidea

Ophiura lutkeni

AY184223

Xenoturbellidae

Xenoturbella bocki

DQ832701


a This sequence, published as belonging to B. lanceolatum, actually belongs to B. floridae [1].

b Sequence chosen as representative of B. belcheri.

c The sequence of strain O4.6 was not considered given its unpublished status, and the high divergence from other individuals of B. belcheri.
References
1. Nohara M, Nishida M, Nishikawa T: New complete mitochondrial DNA sequence of the lancelet Branchiostoma lanceolatum (Cephalochordata) and the identity of this species' sequences. Zoolog Sci 2005, 22(6):671-674.




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