Figure rarefaction curves for the rhizoplane samples from 4 different tree species calculated for the 3 otu definition based on pairwise distance. Names written against the color legend denotes the tree species




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Figure S1. Rarefaction curves for the rhizoplane samples from 4 different tree species calculated for the 0.3 OTU definition based on pairwise distance. Names written against the color legend denotes the tree species.
Table S1. Total number of OTUs and diversity indices for each sampled tree

Tree species

OTUsa

Ace

Chao1

JackKnife

Shannon

Simson (1/D)

Agathis 1

1043

1660

1547

1804

6.19

170.4

Agathis 2

951

1476

1356

1579

6.08

185.0

Agathis 3

800

1286

1236

1468

5.58

80.1

Dipterocarpus 1

844

1375

1254

1472

5.72

90.1

Dipterocarpus 2

1617

7253

3868

4802

6.68

218.6

Dipterocarpus 4

1313

2590

2298

2759

6.32

147.1

Dyera 1

618

1388

1026

1254

4.79

30.9

Dyera 2

625

1378

995

1136

4.81

28.4

Dyera 3

489

715

692

802

4.25

15.2

Gnetum 1

706

1024

953

1035

5.50

77.7

Gnetum 2

1077

3233

2148

2744

6.02

144.3

Gnetum 3

1044

1599

1503

1764

6.24

234.7

a OTUs were measured using CD-HIT at the similarity of 97%.

Table S2. Soil parameters of four tree species and FRIM soil samples.



Tree species

pH

C

N

P

K

Agathis borneensis 1

6.32

4.12

0.16

4.99

66.3

Agathis borneensis 2

5.28

4.02

0.56

9.1

108

Agathis borneensis 3

5.25

6.87

0.44

23.2

181

Dipterocarpus kerrii 1

4.73

1.53

0.35

3.37

47.2

Dipterocarpus kerrii 2

4.89

1.48

0.34

13.7

50.1

Dipterocarpus kerrii 4

5.11

1.19

0.24

1.84

47.2

Dyera costulata 1

4.91

1.77

0.38

16.6

46.8

Dyera costulata 2

4.76

1.58

0.2

17.4

38.9

Dyera costulata 3

5.07

1.94

0.23

18.3

38.6

Gnetum Gnemon

4.84

1.37

0.23

29.1

53.7

Gnetum Gnemon

4.72

1.09

0.19

20

27.1

Gnetum Gnemon

4.94

0.89

0.19

18.2

20.8

FRIM2

6.43

1.46

0.18

16.7

40.1

FRIM3

6.45

1.55

0.41

5.87

63.9

FRIM4

6.36

1.56

0.33

4.98

65

FRIM5

3.89

2.4

0.16

16.5

75.6

FRIM6

3.97

2.24

0.24

16.5

69.4

FRIM7

4.27

3.72

0.33

4.9

97.3

FRIM9

4.32

1.82

0.18

16.2

60.8

FRIM10

4.58

1.88

0.2

15.6

45.3

FRIM11

4.15

1.88

0.2

23.3

53.2

FRIM15

3.6

2.94

0.27

14.9

72.2

FRIM16

4.03

2.56

0.26

6.94

56.7

FRIM17

4.05

2.12

0.27

14.9

61.6

FRIM18

3.61

3.19

0.21

17.4

66.2

FRIM19

4.04

2.42

0.24

3.4

56.8

FRIM20

4.03

2.46

0.22

16.6

44.8

FRIM21

3.92

2.64

0.17

15.4

65.4

FRIM22

4.02

2.13

0.2

26.4

69.2

FRIM23

4.03

2.14

0.15

14.9

56.4

FRIM24

4.29

1.58

0.18

24

50.1

FRIM25

3.83

1.76

0.16

69.2

56

FRIM26

4.05

1.74

0.17

14.8

54.2

FRIM27

4.14

1.56

0.29

16.5

53.6

FRIM28

4.04

2.7

0.29

47.8

50.8

FRIM29

3.5

2.17

0.22

14.9

56.1

FRIM30

3.95

1.89

0.22

15.5

51

Table S3. Relative abundance of Burkholderia species on rhizoplane samples.



Name

AG1

AG2

AG3

DI1

DI2

DI3

DY1

DY2

DY3

GN1

GN2

GN3

Burkholderia tropica

12.97

9.41

7.90

0.00

0.00

0.34

32.00

32.65

39.91

17.92

16.02

14.47

Burkholderia unamae

6.65

7.65

10.90

6.64

6.44

3.72

22.96

18.14

11.11

9.58

8.84

11.49

Burkholderia sabiae

32.91

27.06

7.31

0.70

0.00

0.34

2.97

1.95

4.18

8.75

9.94

15.74

Burkholderia ginsengisoli

0.32

2.75

32.93

4.90

0.99

1.35

0.06

0.06

0.04

0.42

1.66

0.43

Burkholderia plantarii

0.95

0.39

1.56

0.35

0.00

0.00

3.81

3.79

5.55

4.58

2.76

0.85

Burkholderia arboris

0.95

2.94

2.99

0.00

0.00

0.00

2.74

1.79

5.21

2.92

2.21

1.28

Burkholderia tuberum

8.54

9.41

3.35

8.39

7.92

8.78

1.01

0.56

0.90

2.92

2.21

2.98

Burkholderia glathei

5.38

6.67

2.04

3.15

5.45

1.01

0.89

0.50

0.39

12.08

5.52

12.77

Burkholderia oxyphila

0.63

0.39

0.36

9.79

11.39

9.12

1.90

1.28

1.46

0.42

0.55

0.85

Other Burkholderia

30.70

33.33

30.66

66.08

67.82

75.34

31.65

39.29

31.25

40.42

50.28

39.15

AG is Agathis Borneensis, DI is Dipterocarpus kerrii, DY is Dyera costulata, GN is Gnetum sp..

Table S4. Dominant genera in each species of tree and a composite soil from FRIM.



Species

Taxonomy

Dominant genera

Rel. Abundance

(Mean ± SD)



Agathis
borneensis

Proteobacteria>Alphaproteobacteria>Rhizobiales>Rhizobiaceae

Rhizobium

1.70 ± 0.25

Proteobacteria>Gammaproteobacteria>Pseudomonadales>Pseudomonadaceae

Pseudomonas

1.09 ± 0.81

Proteobacteria>Gammaproteobacteria>Xanthomonadales>Sinobacteraceae

Nevskia

0.51 ± 0.12

Acidobacteria>FJ478837_c>FJ478837_o>FJ479430_f

EF688384_g

1.81 ± 0.48

Acidobacteria>FJ478837_c>FJ478837_o>FJ479430_f

EU881177_g

0.67 ± 0.25

Acidobacteria>FJ478837_c>FJ478837_o>FJ479430_f

FJ478939_g

0.60 ± 0.28

Dipterocarpus
kerrli

Acidobacteri>;Acidobacteria_c>Acidobacteriales>Acidobacteriaceae

Acidobacterium

13.21 ± 0.87

Bacteroidetes>Sphingobacteria>Sphingobacteriales>Chitinophagaceae

DQ984541_g

2.17 ± 0.85

Proteobacteria>Alphaproteobacteria>Rhizobiales>Rhizomicrobium_f

Rhizomicrobium

1.61 ± 0.56

Proteobacteria>Alphaproteobacteria>Rhizobiales>Methylocystaceae

Methylocystis

0.20 ± 0.08

Proteobacteria>Alphaproteobacteria>Rhizobiales>Beijerinckiaceae

DQ984545_g

0.70 ± 0.14

Proteobacteria>Alphaproteobacteria>Caulobacterales>Caulobacteraceae

Brevundimonas

0.74 ± 0.48

Cyanobacteria>AB355089_c>AF280849_o>AY328718_f

AY328718_f_uc

0.57 ± 0.05

OP1>;OP10_c>OP10_o>EF580941_f

EF580941_f_uc

0.45 ± 0.14

Dyera
costulata

Proteobacteria>Betaproteobacteria>Burkholderiales>Burkholderiaceae

Burkholderia

52.54 ± 9.36

Proteobacteria>Alphaproteobacteria>Sphingomonadales>Sphingomonadaceae

Novosphingobium

2.45 ± 0.93

Gnetum sp.

Planctomycetes>Planctomycetacia>Planctomycetales>Planctomycetaceae

EU881226_g

1.42 ± 0.85

Bacteroidetes>Flavobacteria>Flavobacteriales>Flavobacteriaceae

Elizabethkingia

1.40 ±1.22

Planctomycetes>Planctomycetacia>Planctomycetales>Planctomycetaceae

Planctomycetaceae_uc

0.83 ± 0.30

Proteobacteria>Gammaproteobacteria>Legionellales>Legionellales_u

Legionellales_uc_g

0.66 ± 0.20

Planctomycetes>Planctomycetacia>Planctomycetales>Planctomycetaceae

Schlesneria

0.74 ± 0.18

Cyanobacteria>AJ306783_c>AJ292684_o>AJ292684_f

AJ292684_f_uc

0.46 ± 0.03

Planctomycetes>Planctomycetacia>Planctomycetales>Planctomycetaceae

Singulisphaera

0.38 ± 0.11

Cyanobacteria>AJ306783_c>AJ292684_o>EF018129_f

EF018129_g

0.43 ± 0.15


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