Exploiting co-linearity among grass-species to map the Aegilops ventricosa




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Exploiting co-linearity among grass-species to map the Aegilops ventricosa derived Pch1 eyespot resistance in wheat and establish its relationship to Pch2.

C. Burt and P. Nicholson


John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, UK


Correspondence: Email: paul.nicholson@bbsrc.ac.uk

Theoretical and Applied Genetics



Table S1: Comparison of Pch1 candidate gene regions in Brachypodium, rice and Sorghum. In cases where corresponding genes were not identified in both regions this is indicated as a dash (-).

COS Marker

Brachypodium Gene

Rice Gene

Sorghum Gene

Gene Function

Xcos7-9

Bradi1g29290

Os06g51500

Sb10g31250

Expressed protein




Bradi1g29300

Os06g51510

Sb10g31240

Expressed protein




-

-

Sb10g31230

Splicing factor 3B subunit 2




Bradi1g29310

Os06g51520

Sb10g31220

Lysine ketoglutarate reductase trans-splicing related 1

Xtr40

Bradi1g29320




-

-

Sb10g31210

Uncharacterised protein




Bradi1g29330

-

-

No homology




Bradi1g29340

-

Sb10g31200

Expressed protein




Bradi1g29350

-

-

Protein kinase like domain




Bradi1g29360

-

-

Leucine rich repeat family protein




Bradi1g29370

-

-




Bradi1g29380

-

-

Retrotransposon protein




-

Os06g51490

-

PHD-finger domain containing protein

Table S1 cont.










COS Marker

Brachypodium Gene

Rice Gene




Gene Function




-

Os06g51480

-

Expressed protein




-

Os06g51470

-

Expressed protein




-

Os06g51460

-

White-brown complex homolog protein




-

Os06g51450

-

PHD-finger domain containing protein




-

Os06g51440

-

Transposon protein




-

Os06g51430

-

Signal peptide peptidase-like




Bradi1g29390

Os06g51420

Sb10g031190

Coiled-coil domain-containing protein

Xorw1

Bradi1g29400

Os06g51410

Sb10g31180

Putative prolyl oligopeptidase B a




-

-

Sb10g31170

Uncharacterised protein




Bradi1g29410

-

Sb10g31160

Expressed protein




Bradi1g29420

Os06g51400

Sb10g31150

Expressed protein




Bradi1g29430

-

-

Retrotransposon protein




Bradi1g29440

-

-

No homology

Xcos7-11

Bradi1g29450

-

-

NBS-LRR disease resistance protein




Bradi1g29460

Os06g51390

Sb10g31140

Expressed protein




Bradi1g29470

Os06g51380

Sb10g31135

Root hairless 1




-

Os06g51370

-

Putative serine carboxypeptidase homologue




Bradi1g29480

Os06g51360

Sb10g31130

LysM domain containing protein




Bradi1g29490

Os06g51350

Sb10g31125

Isopentenyl transferase family protein




-

Os06g51340

-

Retrotransposon protein

Table 5.4 cont.










COS Marker

Brachypodium Gene

Rice Gene




Gene Function




Bradi1g29500

-

Sb10g31120

Plastid high chlorophyll fluorescence 136 precursor




Bradi1g29510

Os06g51330

Sb10g31110

Expressed protein

-

Os06g51320

Sb10g31100

GASR8 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor




Bradi1g29520

-

Sb10g31090

Brassinosteroid biosynthesis-like protein (DWF-1)




Bradi1g29530

-

Sb10g31080

CCHC-type zinc finger protein-like




-

-

Sb10g31075

DNA-directed DNA polymerase B




-

-

Sb10g31070

3' exoribonuclease family, domain 1 containing protein




-

-

Sb10g31060

Hypothetical protein




Bradi1g29540

-

-

Cyclin-L1-1, putative, expressed




Bradi1g29550

-

-

Regulator of ribonuclease activity A




Bradi1g29560

-

Sb10g31050

Pollen signalling protein with adenyl cyclase activity




Bradi1g29570

-

Sb10g31040

Sucrose synthase




Bradi1g29580

Os06g51310

Sb10g31030

PAZ domain containing protein




-

Os06g51300

-

Hypothetical protein




Bradi1g29590

Os06g51290

Sb10g31020

Phytoene synthase, chloroplast precursor










Sb10g31010

Transmembrane protein MLO2




Bradi1g29600

Os06g51280

Sb10g31000

Hexose transporter




Bradi1g29610

-

Sb10g30900

RING-H2 finger protein ATL1R




-

-

Sb10g30980

Hypothetical protein

Xwg7S

Bradi1g29620

Os06g51270

Sb10g30970

1,3-beta-glucan synthase b

a Homologous to wheat oligopeptidase B encoding expressed sequence tag (AB246917) (Leonard et al. 2008).

b Homologous to wheat 1,3-beta-glucan expressed sequence tag (DQ086484) involved in callose synthesis (Voigt et al. 2006).


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