Appendix References used for constructing the phylogenetic tree




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Appendix 1. References used for constructing the phylogenetic tree

Family

References

Accipitridae




Anatidae




Apodidae




Ardeidae




Caprimulgidae




Charadriiformes




Ciconiidae




Columbidae




Emberizidae




Falconidae




Fringillidae




Hirundinidae




Icteridae




Laridae




Mimidae




Parulidae




Phalacrocoracidae




Picidae




Rallidae




Sternidae




Strigidae




Sylvidae




Trochillidae




Troglodytidae




Turdidae




Tyrannidae




Vireonidae




Non-passerine families




Passerine families





References

Barhoum, D. N. & Burns, K. J. 2002 Phylogenetic relationships of the Wrentit based on mitochondrial cytochrome b sequences. Condor 104, 740-749.

Barker, F. K. 2004 Monophyly and relationships of wrens (Aves : Troglodytidae): a congruence analysis of heterogeneous mitochondrial and nuclear DNA sequence data. Mol. Phylo. Evol. 31, 486-504.

Benz, B. W., Robbins, M. B. & Peterson, A. T. 2006 Evolutionary history of woodpeckers and allies (Aves : Picidae): Placing key taxa on the phylogenetic tree. Mol. Phylo. Evol. 40, 389-399.

Bridge, E. S., Jones, A. W. & Baker, A. J. 2005 A phylogenetic framework for the terns (Sternini) inferred from mtDNA sequences: implications for taxonomy and plumage evolution. Mol. Phylo. Evol. 35, 459-469.

Canales-del Castillo, R., Klicka, J., Favela, S. & González-Rojas, J. I. 2010 Molecular phylogenetic analysis of an endangered Mexican sparrow: Spizella wortheni. Molecular Phylogenetics and Evolution 57, 1319-1322.

Carson, R. J. & Spicer, G. S. 2003 A phylogenetic analysis of the emberizid sparrows based on three mitochondrial genes. Mol. Phylo. Evol. 29, 43-57.

Cicero, C. & Johnson, N. K. 2002 Phylogeny and character evolution in the Empidonax group of tyrant flycatchers (Aves : Tyrannidae): A test of W. E. Lanyon's hypothesis using mtDNA sequences. Mol. Phylo. Evol. 22, 289-302.

Donne-Gousse, C., Laudet, V. & Hanni, C. 2002 A molecular phylogeny of Anseriformes based on mitochondrial DNA analysis. Mol. Phylo. Evol. 23, 339-356.

Griffiths, C. S., Barrowclough, G. F., Groth, J. G. & Mertz, L. 2004 Phylogeny of the Falconidae (Aves): a comparison of the efficacy of morphological, mitochondrial, and nuclear data. Mol. Phylo. Evol. 32, 101-109.

Griffiths, C. S., Barrowclough, G. F., Groth, J. G. & Mertz, L. A. 2007 Phylogeny, diversity, and classification of the Accipitridae based on DNA sequences of the RAG-1 exon. J. Avian Biol. 38, 587-602.

Hackett, S. J., Kimball, R. T., Reddy, S., Bowie, R. C. K., Braun, E. L., Braun, M. J., Chojnowski, J. L., Cox, W. A., Han, K. L., Harshman, J., Huddleston, C. J., Marks, B. D., Miglia, K. J., Moore, W. S., Sheldon, F. H., Steadman, D. W., Witt, C. C. & Yuri, T. 2008 A phylogenomic study of birds reveals their evolutionary history. Science 320, 1763-1768.

Han, K.-L., Robbins, M. B. & Braun, M. J. 2010 A multi-gene estimate of phylogeny in the nightjars and nighthawks (Caprimulgidae). Molecular Phylogenetics and Evolution 55, 443-453.

Helbig, A. J., Seibold, I., Bednarek, W., Brüning, H., Gaucher, P., Ristow, D., Scharlau, W., Schmidl, D. & Wink, M. 1994 Phylogenetic relationships among falcon species (genus Falco) according to DNA sequence variation of the cytochrome b gene. In Raptor conservation today (ed. B.-U. Meyburg & R. D. Chancellor), pp. 593-599: The Pica Press.

Jacobsen, F., Friedman, N. R. & Omland, K. E. 2010 Congruence between nuclear and mitochondrial DNA: Combination of multiple nuclear introns resolves a well-supported phylogeny of New World orioles (Icterus). Molecular Phylogenetics and Evolution 56, 419-427.

Johnson, K. P. & Clayton, D. H. 2000 Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes). Mol. Phylo. Evol. 14, 141-151.

Johnson, K. P., De Kort, S., Dinwoodey, K., Mateman, A. C., Ten Cate, C., Lessells, C. M. & Clayton, D. H. 2001 A molecular phylogeny of the dove genera Streptopelia and Columba. Auk 118, 874-887.

Johnson, K. P. & Sorenson, M. D. 1999 Phylogeny and biogeography of dabbling ducks (genus : Anas): a comparison of molecular and morphological evidence. Auk 116, 792-805.

Johnson, N. K. & Cicero, C. 2002 The role of ecologic diversification in sibling speciation of Empidonax flycatchers (Tyrannidae): Multigene evidence from mtDNA. Mol. Ecol. 11, 2065-2081.

Jonsson, K. A. & Fjeldsa, J. 2006 A phylogenetic supertree of oscine passerine birds (Aves : Passeri). Zool. Scr 35, 149-186.

Kennedy, M., Gray, R. D. & Spencer, H. G. 2000 The phylogenetic relationships of the shags and cormorants: Can sequence data resolve a disagreement between behavior and morphology? Mol. Phylo. Evol. 17, 345-359.

Klicka, J., Burns, K. & Spellman, G. M. 2007 Defining a monophyletic cardinalini: A molecular perspective. Mol. Phylo. Evol. 45, 1014-1032.

Klicka, J., Voelker, G. & Spellman, G. M. 2005 A molecular phylogenetic analysis of the "true thrushes" (Aves : Turdinae). Mol. Phylo. Evol. 34, 486-500.

Klicka, J., Zink, R. M. & Winker, K. 2003 Longspurs and snow buntings: phylogeny and biogeography of a high-latitude clade (Calcarius). Mol. Phylo. Evol. 26, 165-175.

Lerner, H. R. L., Klaver, M. C. & Mindell, D. P. 2008 Molecular phylogenetics of the Buteonine birds of prey (Accipitridae). Auk 125, 304-315.

Lerner, H. R. L. & Mindell, D. P. 2005 Phylogeny of eagles, Old World vultures, and other Accipitridae based on nuclear and mitochondrial DNA. Mol. Phylo. Evol. 37, 327-346.

Livezey, B. C. 1997 A phylogenetic analysis of basal Anseriformes, the fossil Presbyornis, and the interordinal relationships of waterfowl. Zool. J. Linn. Soc. 121, 361-428.

Livezey, B. C. 1998 A phylogenetic analysis of the Gruiformes (Aves) based on morphological characters, with an emphasis on the rails (Rallidae). Phil. Trans. R. Soc. Lond. B. Biol. Sci. 353, 2077-2151.

Lovette, I. J., Pérez-Emán, J. L., Sullivan, J. P., Banks, R. C., Fiorentino, I., Córdoba-Córdoba, S., Echeverry-Galvis, M., Barker, F. K., Burns, K. J., Klicka, J., Lanyon, S. M. & Bermingham, E. 2010 A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves). Molecular Phylogenetics and Evolution 57, 753-770.

Lovette, I. J. & Rubenstein, D. R. 2007 A comprehensive molecular phylogeny of the starlings (Aves: Sturnidae) and mockingbirds (Aves: Mimidae): Congruent mtDNA and nuclear trees for a cosmopolitan avian radiation. Molecular Phylogenetics and Evolution 44, 1031-1056.

Lüpold, S., Linz, G. & Birkhead, T. R. 2009 Sperm design and variation in the New World blackbirds (Icteridae). Behav. Ecol. & Sociobiol. 63, 899-909.

McCraken, K. G. & Sheldon, F. H. 1998 Molecular and osteological heron phylogenies- Sources of incongruence. Auk 115, 127-141.

McGuire, J. A., Witt, C. C., Remsen, J. V., Dudley, R. & Altshuler, D. L. 2009 A higher-level taxonomy for hummingbirds. J. Ornithol 150, 155-165.

Murray, B. W., McGillivray, W. B., Barlow, J. C., Beech, R. N. & Strobeck, C. 1994 The use of cytochrome b sequence variation in estimation of phylogeny in the Vireonidae. Condor 96, 1037-1054.

Nguembock, B., Fjeldså, J., Couloux, A. & Pasquet, E. 2009 Molecular phylogeny of Carduelinae (Aves, Passeriformes, Fringillidae) proves polyphyletic origin of the genera Serinus and Carduelis and suggests redefined generic limits. Molecular Phylogenetics and Evolution 51, 169-181.

Ohlson, J., Fjeldsa, J. & Ericson, P. G. P. 2008 Tyrant flycatchers coming out in the open: phylogeny and ecological radiation of Tyrannidae (Aves, Passeriformes). Zool. Scr 37, 315-335.

Pons, J. M., Hassanin, A. & Crochet, P. A. 2005 Phylogenetic relationships within the Laridae (Charadriiformes : Aves) inferred from mitochondrial markers. Mol. Phylo. Evol. 37, 686-699.

Riesing, M. G., Kruckenhauser, L., Gamauf, A. & Haring, E. 2003 Molecular phylogeny of the genus Buteo (Aves: Accipitridae) based on mitochondrial marker sequences. Mol. Phylo. Evol. 27, 328-342.

Sheldon, F. H. & Slikas, B. 1997 Advances in Ciconiiform Systematics 1976-1996. Col. Waterbirds 20, 106-114.

Sheldon, F. H., Whittingham, L. A., Moyle, R. G., Slikas, B. & Winkler, D. W. 2005 Phylogeny of swallows (Aves: Hirundinidae) estimated from nuclear and mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 35, 254-270.

Thomas, G. H., Wills, M. A. & Szekely, T. 2004 A supertree approach to shorebird phylogeny - art. no. 28. BMC Evol. Biol 4, 24.

Thomassen, H. A., den Tex, R. J., de Bakker, M. A. G. & Povel, G. D. E. 2005 Phylogenetic relationships amongst swifts and swiftlets: A multi locus approach. Mol. Phylo. Evol. 37, 264-277.

Van der Meij, M. A. A., de Bakker, M. A. G. & Bout, R. G. 2005 Phylogenetic relationships of finches and allies based on nuclear and mitochondrial DNA. Mol. Phylo. Evol. 34, 97-105.

Voelker, G. & Klicka, J. 2008 Systematics of Zoothera thrushes, and a synthesis of true thrush molecular systematic relationships. Molecular Phylogenetics and Evolution 49, 377-381.

Weibel, A. C. & Moore, W. S. 2005 Plumage convergence in Picoides woodpeckers based on a molecular phylogeny, with emphasis on convergence in Downy and Hairy woodpeckers. Condor 107, 797-809.

Wink, M., El-Sayed, A. A., Sauer-Gurth, H. & Gonzalez, J. 2009 Molecular phylogeny of owls (Strigiformes) inferred from DNA sequences of the mitochondrial cytochrome b and the nuclear RAG-1 gene. Ardea 97, 581-591.



Yuri, T. & Mindell, D. P. 2002 Molecular phylogenetic analysis of Fringillidae, "New World nine-primaried oscines" (Aves : Passeriformes). Mol. Phylo. Evol. 23, 229-243.




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